miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|211630396|gb|GE504663.1|GE504663 AGAACTAGCCAAGGATGATCCAATACTATGGACCTAAAACGATAAACAAATGCATAAAAATTAAGTAGATAGTTGTAGAG
ACTTTTGACCAAAGTCCCAACGATAAGTTTTGTTTTTTGGTCAGTAGATCATGCATATGTATCCCACCAAGAACATGCAT
AGCATCATGAGCAATCAGCCTTGGAAATATTTTTAAGCAGAGTGACTGCTCATGATGTTATCTCATTTCTTGACAGGAAC
TTGTTCAACACGTGCGAAAACATAACTGTTGCCCCCTTGCTAGACTGTCCTATACCTTTGATCCGTTCATCGGAACCCTC
CGTTTGGAGCTGGAGCCCAATAATCCGCTCCGTTGTCACTCCCAACTTGCATCGTGCATGAAACAGGAACTAGACATAGT
CCTCTACTTCTCAAATCCTTCTTTGGTTCTTCATGAGGATCCTGCTCAAGGGCAGATCCTTTCATCTTCATGCAGCTATC
ATTCAGAAGCTGACCAGGATCTTCAGGAAATAAACAGTTTCTCTCTCCTTGTTGAACAGAATGTCGTTGGTTTCTCATGT
TTACTGATCCACTGGCAAGGTAAGGTAGGCTGAGGGCCTCAATTTGACTCTGAAGGAATTTTATGTAACCAATAGCTTCT
AAAAGCACCGAAGCTGTGTTAGTCTTTCCAAACGGAGAAACAAGCTGGGG




Most similar to sp|Q8S3D1|BH068_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis
           thaliana GN=BHLH68 PE=2 SV=2
          Length = 407

 Score =  178 bits (452), Expect = 3e-44
 Identities = 90/125 (72%), Positives = 105/125 (84%), Gaps = 5/125 (4%)
 Frame = -1

Query: 687 QLVSPFGKTNTASVLLEAIGYIKFLQSQIEALSLPYLAS-GSVNMRNQRHSVQQGERNCL 511
           QLVSPFGKT+TASVL EAIGYI+FLQSQIEALS PY  +  S NMR+Q+H   QG+R+C+
Sbjct: 278 QLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGTTASGNMRHQQHL--QGDRSCI 335

Query: 510 FPEDPGQLLNDSCMKMKGSALE----QDPHEEPKKDLRSRGLCLVPVSCTMQVGSDNGAD 343
           FPEDPGQL+ND CMK +G++      Q+  EEPKKDLRSRGLCLVP+SCT+QVGSDNGAD
Sbjct: 336 FPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRGLCLVPISCTLQVGSDNGAD 395

Query: 342 YWAPA 328
           YWAPA
Sbjct: 396 YWAPA 400